YeaStar RNA Kit

YeaStar RNA Kit

Cat#NameSize
R1002YeaStar RNA Kit40 Preps

Documents

Protocol:

SDS (MSDS):

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Description

Highlights

  •  Simple: Fast spin-column procedure yields pure yeast RNA without using glass beads or phenol.
  •  Versatile: Efficient RNA isolation from a broad spectrum of fungal species susceptible to Zymolyase.
  •  High-Quality: Isolated RNA is suitable for use in RT-PCR, Northern blotting, etc.

Description

The YeaStar RNA Kit provides all the necessary reagents for RNA isolation from a broad spectrum of fungi including: Aspergillus fumigatus, Aspergillus nidulans, Aspergillus nivens var. aureus, Candida albicans/, Pichia pastoris, Saccharomyces cerevisiae, Schizosaccharomyces pombe. Generally, the kit can be used for the purification of high-quality, total RNA from any fungus that can be lysed by yeast lytic enzyme. The kit facilitates the purification of 10-25 µg of total RNA from 1-1.5 ml of cultured cells using innovative Zymo-Spin column technology.

Applicable For

Isolated RNA is well suited for downstream applications such as Northern blotting, RT-PCR, Next-Generation Sequencing, Microarray, hybridization and other sensitive applications

Elution Volume

≥ 60 µl DNase/RNase-Free Water

Equipment

Microcentrifuge & Heat Block/Bath

Processing Time

30 minutes

Processing Volume

≤ 1.5 ml of Culture (1-5 x 107 cells)

Purity

Typical A260/A280 & A260/A230 ≥ 1.8

Sample Source

Cell Culture (Colonies/Patches or Liquid Culture)

Size Range

≥ 17 nt

Type

Total RNA

Yield

≤ 25 µg of total RNA

Q1: What strains is this kit compatible with?

Any strains susceptible to Zymolyase, which includes the following fungal genera: Asbya Kloekera Candida Kluyveromyces Debaryomyces Lipomyces Eremothecium Metschikowia Endomyces Pichia Hansenula Pullularia Hanseniaspora Saccharomyces Saccaromycodes Saccharomycopsis Schizosaccahromyces Torulopsis

RT-PCR was used to analyze S1 nuclease protection using RNA extracted from Saccharomyces cerevisiae strains with the YeaStar RNA kit. Researchers showed that histone H2B monoubiquitylation and it deubiquitylation are related in gene activation.

Henry, KW et al. Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. Genes & Development. 2003.

The YeaStar RNA kit was used to extract total RNA from Saccharomyces cerevisiae cells and spheroblasts for downstream qRT-PCR quantification. The WEE1 kinase was found to be an epigenetic modulator that inhibits transcription of histone genes.

Mahajan, K et al. H2B Tyr37 phosphorylation suppresses expression of replication-dependent core histone genes. Nature Structural & Molecular Biology. 2012.

Researchers found that two positive feedback loops regulated by Gal1p and Gal3p affect network activity and induce bimodal distribution of gene expression. The YeaStar RNA kit was used for yeast RNA extraction for real-time qPCR.

Venturelli, OS et al. Synergistic dual positive feedback loops established by molecular sequestration generate robus bimodal response. PNAS. 2012.

Abundance of heterologous mRNA was analyzed by quantitative RT-PCR using total RNA extracted from mid-log phase cells using the YeaStar RNA kit. mRNA half-life changes were determined to be the major cause of varied protein and transcript expression level.

Curran, KA et al. Use of expression-enhancing terminators in Sacchromyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications. Metabolic Engineering. 2013.

Transcriptional analysis of phenylalanine over-producing yeast mutants was performed using cDNA synthesized from RNA extracted with the YeaStar RNA kit. Saccharomyces cerevisiae was used a host of renewable styrene production, reaching titers of 29 mg/L and a 60% improvement over initial strains.

McKenna, R et al. Rational and combinatorial approaches to engineering styrene production by Saccharomyces cerevisiae. Microbial cell Factories. 2014.

Total RNA was extracted from Candid albicans using the YeaStar RNA kit for downstream qRT-PCR expression analysis of ZWF1, which is induced as a core stress response and involved in adaptive antioxidant response. Monoterpene phenols thymol and carvacrol was found to induce oxidative stress at lower concentrations.

Khan, A et al. Effect of two monoterpene phenols on antioxidant defense system in Candida albicans. Microbial Pathogenesis. 2015.

Different Komagataella strains comprising Pichia grown in YPD were used as sample input for the YeaStar RNA kit for long-read and short-read genome sequencing.

Love, KR et al. Comparative genomics and transcriptomics of Pichia pastoris. BMC Genomics. 2016.

The YeaStar RNA kit was used to extract RNA from Yarrowia liplytica cultures for RT-qPCR. Researchers were able to develop a CRISPR interference system for gene repression, achieving homologous recombination efficiencies as high as 90%.

Schwartz, C et al. CRISPRi repression of nonhomologous end-joining for enhanced genome engineering via homologous recombination in Yarrowia lipolytica. Biotechnology and Bioengineering. 2017.

Yeast RNA was extracted with the YeaStar RNA kit to test for CRISPR-Cas9 editing effects on gene expression using RT-qPCR. 572 yeast variants were identified with significant fitness differences, being enriched in promoters.

Sharon, E et al. Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing. Cell. 2018.

Total RNA was extracted from transformed yeast using the YeaStar RNA kit and passed RNA integrity assessment. Researchers analyzed the antiviral enzyme OAS1 functionality in yeast and found that loss-of-function alleles are common among non-human primates.

Carey, CM et al. Recurrent Loss-of-Function Mutations Reveal Costs to OAS1 Antiviral Activity in Primates. Cell Hose & Microbe. 2019.

Cat # Name Size
W1001-6 DNase/RNase-Free Water 6 ml
R1001-1 YR Digestion Buffer 3.2 ml
R1001-2 YR Lysis Buffer 6.4 ml
R1003-3-6 RNA Wash Buffer 6 ml
C1001-50 Collection Tubes 50 Pack
C1006-50-G Zymo-Spin IIICG Columns 50 Pack