Synthetic Viral Controls

Trusted, accurate, and safe controls for a wide range of applications

The recent Coronavirus pandemic has led to the unprecedented need for diagnostic tests for detecting the presence of SARS-CoV-2 and other Respiratory viruses in a variety of sample types. To address this need, laboratories around the world need high quality tools to enable them in catering to this rapidly expanding requirement for testing.


Reproducible, Quality Results

Positive controls provide quality control measures for a wide range of applications from diagnostic assay development to day-to-day testing. This includes the verification and validation of diagnostic tests of both next-generation sequencing (NGS) and reverse transcription polymerase chain reaction (RT-PCR) assays.


A Safe and Effective Alternative to “Live Virus”

Controls based on viral nucleic acids extracted from either an infected patient or from live virus propagated in cell culture have safety and security concerns. Synthetic controls created through gene synthesis broaden access across diverse strains while mitigating risk.


Flexible formats for your applications

Choose from Standard, Assay Ready, or Encapsuled Control formulations. The standard format provides the controls at high concentration in a frozen liquid formulation. The Assay Ready Controls are provided as a dried pellet that increases stability. Just as protein encapsulation of viruses offers more stable molecular storage, Twist’s The Encapsulated Control products leverage a metal capsule sealed around a desiccated pellet to enhance stability of the RNA controls.

Both the Assay Ready and the Encapsulated formulations are single use controls. The Assay Ready format allows for shipping at ambient temperatures and storage in standard freezers. The enhanced stability of the Encapsulated controls enables extended shelf life and both ship and store at room temperature. Ambient shipping reduces cost and increases accessibility for researchers across the globe.

 

 Standard Controls Assay Ready Controls Encapsulated Controls
BiosafetyLevel 1 Level 1 Level 1
StorageTemperature: -70°C to -90°C Temperature: -20°C Ambient
(4°C - 40°C)
Specification Range Approximately 1x10^6 copies/μL Approximately 2x10^6 copies/tube Approximately 50,000 copies/tube
Physical State Frozen liquid Dried pellet Encapsulated dried pellet
Shelf Life 2 years 2 years 5 years
ShippingDry Ice AmbientAmbient

 

KEY BENEFITS

Fully synthetic RNA
  • Includes fully synthetic RNA generated from Twist gene fragments
  • Powerful alternative to live viruses
Full viral genome coverage
  • >99.9% viral genome coverage
  • NGS sequence verified
  • Enables versatility in assay design
Versatile controls
  • Positive controls perform for both qPCR and NGS assays
  • Content is well-aligned with Twist target enrichment panels
Monkeypox Controls

Twist’s Synthetic human Monkeypox Virus (hMPXV) Controls are based on sequences from either the Congo Basin (CB) or West African (WA) clades of hMPXV and provide coverage of ≥80% of the viral genome. As a result, these controls support the design of custom assays targeting regions of the genome relevant to orthopoxvirus research and can be used for both amplicon and capture-based detection methods. Twist’s hMPXV controls have been validated and are compatible with CDC recommended real-time PCR testing procedures for monkeypox detection. Control 1 and Control 2 are composed of 154 and 151 overlapping 1.8kb fragments, respectively, which tile the genome at an interval of 900bp. Each control is present at  copies and provided at a concentration of approximately 100,000 copies/uL. The figure on the right shows a taxonomic relationship between the WA and CB clades of hMPXV as well as other orthopoxviruses. Please contact your local sales representative for more information.

Note: The Twist Synthetic human Monkeypox Virus
(hMPXV) Controls are not ISO-13485 certified

Virus name Genbank IDs, virus type, and lengths

Virus name Genbank IDs, virus type, and length for each virus included in the Twist Respiratory Virus Controls

The use of positive controls in quality control

Twist has created synthetic RNA controls for several viral genomes. These variants were selected to cover a wide range of sequence diversity. Each control consists of six non-overlapping 5 kb fragments generated from Twist Gene Fragments then transcribed into ssRNA. These controls provide coverage of greater than 99.9% of the bases of the SARS-CoV-2 viral genome. The majority of the controls are provided in the standard format which consist of 100 μL at a concentration of approximately one million copies per microliter. Twist also offers certain controls in Assay Ready and Encapsulated Formats that are supplied as a desiccated pellet. The Assay Ready Controls are supplied at approximately two million copies per tube. The Encapsulated Controls are supplied at approximately 50,000 copies per tube. The Twist Assay Ready Synthetic SARS-CoV-2 RNA Control was developed in partnership with the US CDC and integrated into the CDC Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay, which tests for influenza A, B and SARS-CoV-2 simultaneously. The Twist Assay Ready Synthetic SARS-CoV-2 RNA Control is now available for customers outside the CDC.

Twist Bioscience Encapsulated Control products offer a unique storage and delivery method for Twist’s established Synthetic SARS-CoV-2 RNA controls. Just as protein encapsulation of viruses offers more stable molecular storage, Twist’s Encapsulated Control products leverage a novel method to seal a metal capsule around a desiccated pellet to enhance stability of the RNA controls. Due to the enhanced stability, they can be shipped and stored at room temperature, reducing cost and improving accessibility globally. The Encapsulated Controls are sold in a rack of 16 or 96 tubes, are single use, and have a 5-year shelf life from the date of manufacture.

This product has not been FDA cleared or approved, but has been authorized for emergency use by FDA under an EUA for use by authorized laboratories; This product has been authorized only for the detection of nucleic acid from SARS-CoV-2, along with the identification and differentiation of SARS-CoV-2 PANGO lineages and the identification of specific SARS-CoV-2 genomic mutations, not for any other viruses or pathogens; and, the emergency use of this product is only authorized for the duration of the declaration that circumstances exist justifying the authorization of emergency use of in vitro diagnostics for detection and/or diagnosis of COVID-19 under Section 564(b)(1) of the Federal Food, Drug and Cosmetic Act, 21 U.S.C. § 360bbb-3(b)(1), unless the declaration is terminated or authorization is revoked sooner.

PART # CONTROL GenBank/GISAID ID GISAID NAME
102019 Control 1 MT007544.1 Australia/VIC01/2020
102024 Control 2 MN908947.3 Wuhan-Hu-1
103925 Assay Ready Control 2 MN908947.3 Wuhan-Hu-1
104422 Encapsulated Control 2 (16) MN908947.3 Wuhan-Hu-1
104426 Encapsulated Control 2 (96) MN908947.3 Wuhan-Hu-1
102860 Control 3 LC528232.1 Japan/Hu_DP_Kng_19-020/2020
102862 Control 4 MT106054.1 USA/TX1/2020
102917 Control 5 MT188340 USA/MN2-MDH2/2020
102918 Control 6 MT118835 USA/CA9/2020
103087 Control 7 EPI_ISL_418227 France/HF2393/2020
103511 Control 8 MT066176 Taiwan/NTU02/2020
103512 Control 9 MT152824 USA/WA2/2020
103513 Control 10 EPI_ISL_414648 USA/CA-PC101P/2020
103514 Control 11 EPI_ISL_417739 Iceland/5/2020
103515 Control 12 EPI_ISL_420244 England/SHEF-C05B2/2020
103533 Control 13 EPI_ISL_421184 Belgium/ULG-10004/2020
103907 Control 14
Alpha
EPI_ISL_710528 England/205041766/2020
103926 Assay Ready Control 14
Alpha (B.1.1.7)
EPI_ISL_710528 England/205041766/2020
103909 Control 15
Alpha
EPI_ISL_601443 England/MILK-9E05B3/2020
103927 Assay Ready Control 15
Alpha (B.1.1.7)
EPI_ISL_601443 England/MILK-9E05B3/2020
104043 Control 16
Beta (B.1.351)
EPI_ISL_678597 South Africa/KRISP-EC-K005299/2020
104044 Control 17
Gamma (P.1)
EPI_ISL_792683 Japan (Brazil) /IC-0564/2021
104338 Control 18
Kappa (B.1.617.1)
EPI_ISL_1662307 India/CT-ILSGS00361/2021
104529 Control 19
Iota (B.1.526)
EPI_ISL_1300881 USA/NY-MSHSPSP-PV24650/2020
104530 Control 20 (B.1.427) EPI_ISL_730092 USA/CA-ALSR-4704/2020
104531 Control 21
Epsilon (B.1.429)
EPI_ISL_672365 USA/CA-CZB-12943/2020
104532 Control 22 (B1.1.519) EPI_ISL_933685 Mexico/CMX-InDRE_208/2021
104533 Control 23
Delta (B.1.617.2)
EPI_ISL_1544014 India/MH-NCCS-P1162000182735/2021
104534 Control 24
(B.1.617.3)
EPI_ISL_1939891 India/MH-SEQ-221_S66_R1_001/2021
104538 Control 28
Delta (AY.1)
EPI_ISL_2695467 Portugal/PT9543/2021
104423 Encapsulated Control 28 (16) Delta (AY.1) EPI_ISL_2695467 Portugal/PT9543/2021
104427 Encapsulated Control 28 (96) Delta (AY.1) EPI_ISL_2695467 Portugal/PT9543/2021
104539 Control 29
Delta (AY.2)
EPI_ISL_2693246 USA/WA-CDC-UW21061750277/2021
105204 Control 48 (B.1.1.529/BA.1) EPI_ISL_6841980 Hong Kong/HKU-211129-001/2021
104424 Encapsulated Control 48 (16)
(B.1.1.529/BA.1)
EPI_ISL_6841980 Hong Kong/HKU-211129-001/2021
104428 Encapsulated Control 48 (96)
(B.1.1.529/BA.1)
EPI_ISL_6841980 Hong Kong/HKU-211129-001/2021
105345 Control 50 (B.1.1.529+BA.2) EPI_ISL_7190366 Australia/QLD2568/2021
105346 Control 51 (B.1.1.529+BA.2) EPI_ISL_7718520 England/MILK-2DF642C/2021
105865 Control 62 (B.2.12.1) EPI_ISL_12248637.1 Denmark/DCGC-493190/2022
105857 Control 63 (B.2.12.1)  EPI_ISL_12303256.1 USA/NY-CDC-LC0579415/2022
106196 Control 64 (BA.5) EPI_ISL_12516495 hCoV-19/England/LSPA-3DC1269/2022
106197 Control 65 (BA.5) EPI_ISL_12620611 hCoV-19/USA/TN-ASC-210769476/2022
106198 Control 66 (BA.4) EPI_ISL_12454576 hCoV-19/USA/TX-HMH-M-96682/2022
106199 Control 67 (BA.4) EPI_ISL_12605687 hCoV-19/USA/CA-CDC-QDX36065390/202

Available Respiratory Virus Controls

The Twist Synthetic Respiratory Virus Controls cover a broad range of RNA and DNA viruses relevant to respiratory disease research. These controls are aligned with the content of the Twist Respiratory Virus Research Panel (PN 103067) and are suitable for use with Twist Fixed Panel NGS workflows or for use with RT-PCR or qPCR experiments of your own design.

The figure shows a taxonomic tree of viruses covered by the Twist Respiratory Virus Controls. The table shows GenBank IDs, virus type and length for each control. Additional viral controls may be available for custom synthesis. Please contact your local sales representative for more details.

Virus name Genbank IDs, virus type, and lengths

Virus name Genbank IDs, virus type, and length for each virus included in the Twist Respiratory Virus Controls. Additional viral controls may be available for custom synthesis.